One of these days I'll try to put together an update on my current workflow, for what it's worth. Technology changes so fast, of course, and its all different depending on what tools you use, but at the moment, I'm having good luck with a simple process that is basically
import everything into Final Cut X,
make a "multi-clip", which syncs all files automatically
Edit video as desired, add titles, etc
Save video
Open video in Logic
Mix audio, EQ, add reverb, etc
Save video with mixed audio
Encode as H264 using MPEGStreamclip
upload to you tube
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